PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_12930.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 156aa    MW: 17486.6 Da    PI: 4.8398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_12930.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-16244955
                      AP2  9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             ++ +g+W++eIrdp     + +r++lg+f taeeAa a++ a+k+++g
  Rsa1.0_12930.1_g00002.1  2 RP-WGKWASEIRDPE----KgARVWLGTFNTAEEAAMAYDVAAKRIRG 44
                             56.**********73....24************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.863152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-28153IPR001471AP2/ERF domain
CDDcd000187.64E-31154No hitNo description
SMARTSM003802.2E-29158IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-19253IPR016177DNA-binding domain
PfamPF008477.6E-10244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
KRPWGKWASE IRDPEKGARV WLGTFNTAEE AAMAYDVAAK RIRGDKAKLN FPDLLHNPPP  60
AIPTLPRQDN QPPVKKLCVS SQSELTQSSF PGECIGFGNG DEFRNMSYGY DLKQQISSLE  120
SFLELDGITP EHPSQLHETG SEVDLWMLHD VIASYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20152860ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-201521163ATERF1
3gcc_A6e-201521163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893171e-156AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736345.11e-94PREDICTED: ethylene-responsive transcription factor RAP2-3-like
RefseqXP_009135498.11e-94PREDICTED: ethylene-responsive transcription factor RAP2-3-like
RefseqXP_013651600.11e-94PREDICTED: ethylene-responsive transcription factor RAP2-3-like
SwissprotP427362e-80RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A078CZS91e-94A0A078CZS9_BRANA; BnaA03g34290D protein
TrEMBLA0A078ITY71e-94A0A078ITY7_BRANA; BnaCnng27470D protein
TrEMBLM4CBR01e-94M4CBR0_BRARP; Uncharacterized protein
STRINGBra001640.1-P3e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-71ethylene-responsive element binding protein